FlexTaxD (Flexible Taxonomy Databases) - Create, add, merge different taxonomy sources (QIIME, GTDB, NCBI and more) and create metagenomic databases (kraken2, ganon and more )

Deep learning methods for feature selection in gene expression autism data.

Assign taxonomy with blast, can be used for qiime

🌱 ➡️ 🌳 Add new taxa or taxonomic groups to the NCBI Taxdump files

Microarray Analysis Pipeline in Python

Julia package to handle the NCBI Taxonomy database.

Analysis of the viral genomes of SARS-CoV2 using MAFFT and igtree

An R code to convert NCBI data files into CSV

A tool for manipulating fasta files and obtaining new sequence data from NCBI in fasta format

Explore bioinformatics tasks with Python! This collection offers scripts using Biopython for NCBI database access, sequence parsing, DNA transcription, translation, GC content calculation, and sequence analysis. Perfect for beginners learning bioinformatics in Python.

Find and retrieve biological data and its metadata from NCBI

Bio Python Project using getopt library in python and engaging with the command line prompt.

Genome Metadata Visualizer is a series of scripts written to process and visualise genome metadata after it is pulled from NCBI using the dataset and dataformat command line tools.

This Python script retrieve all children organism under an ancestor in NCBI taxonomy.

A list of publicly available Microarray Gene Expression datasets with proper attribution and associated toolkits.

Python class project in collab with @heloint and @AniValle. Using Entrez, Seq.io, regex, pandas

Crawling NCBI Pubmed Data using HTML and jQuery

NCBI Datasets is an experimental resource for finding and building datasets

A tool to fetch Protein sequences of different subtypes of Influenza A virus from the NCBI database and create a local database to store the sequences for further library preparation used for Phage-Immunoprecipitation Sequencing.

How to download genomes using the accession number